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atactk: a toolkit for ATAC-seq data
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atactk: a toolkit for ATAC-seq data
¶
Introduction
What’s in the box?
Programs we’ve found useful in ATAC-seq pipelines
A Python library you can use in your own tools for processing ATAC-seq data
License
Installation
Requirements
Usage
Command-line applications
Adapter trimming
Cut matrix generation
Discrete matrices
Aggregate matrices
Binning
Creating ATAC-seq signal plots for motifs
Using the
atactk
library
Getting help
Contributing
Contributing knowledge
Contributing code
Pull Request Guidelines
Credits
History
0.1.5 (2016-01-08)
0.1.4 (2015-12-17)
0.1.3 (2015-12-10)
0.1.2 (2015-12-06)
0.1.1 (2015-12-01)
0.1.0 (2015-10-31)
Indices and tables
¶
Index
Module Index
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